Everything but the Bagel Seed Crackers

These Everything But the Bagel Seed Crackers are crispy, savoury, and satisfyingly nourishing. Made entirely from seeds and naturally gluten-free, they’re the perfect high-protein snack to pair with dips, cheese, or your favourite toppings. Easy to make, endlessly customizable, and beautifully wholesome. 

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Everything But the Bagel Seed Crackers (Gluten Free + High Protein)

I have been gatekeeping this recipe for too long, and I’m finally ready for you! Seed crackers are my new favourite obsession as they are easy and absolutely fun to make. Oh, and of course, they are packed with fibre, protein, and this recipe may be the healthiest recipe I’ve ever published! These crackers are for everyone. They are vegan, gluten-free, dairy-free, nut-free and sugar-free. They are literally all the “free” any recipe can be. If you have a seed allergy, these are not for you, but otherwise, I think I’ve covered all the allergies I can think of!

I love everything but the bagel seasoning, and my favourite is from Trader Joe’s. Unfortunately,  here in Canada, we don’t have Trader Joe’s, soooo I set out to find a good alternative. I was surprised to find out that most spice companies make one, and the best one I found was from Simply Organic. However, there are a lot of others on Amazon if you want to continue the search!

You’re new favourite everyday cracker!

If you’re looking for an everyday cracker that’s healthy and easy to make, this is the recipe you need. I 100% will be making them for the holidays this season because they go well with everything. They are crispy and rather addictive, so don’t say I didn’t warn you! A bag or box of crackers can be super convenient, but making your own is incredibly satisfying. Make sure you bake them long enough so they are crispy. Spreading them in an even layer is key. If the middle is too thick, the crackers won’t crisp up. If you take them out of the oven thinking they are done, cut them and notice they are still a little soft, put the whole thing back in the oven for a few more minutes to crisp up. Just be careful not to let them burn! Let’s get crackin’

A Few Things You’ll Need:

Everything But the Bagel Seed Crackers Ingredients

Every ingredient in this multi-seed cracker recipe plays an essential role in creating the perfect texture: crisp, hearty, and deeply flavorful.

  • Pumpkin seeds: These add crunch and a subtle sweetness, while offering a wonderful dose of protein, zinc, and magnesium.
  • Sunflower seeds: Mild and buttery, they balance out the stronger flavours and add even more healthy fats and texture.
  • White sesame seeds: Create a light, toasty flavour that deepens as they bake.
  • Black sesame seeds: Bring a slightly bolder, earthier note and add contrast to the cracker’s golden surface.
  • Chia seeds: Act as a natural binder, absorbing water to help the mixture gel into a cohesive dough.
  • Buckwheat groats: Add a crisp, grain-like crunch and an earthy flavour that pairs beautifully with the seeds.
  • Ground flaxseed: Rich in omega-3s, flax adds a nutty flavour and helps bind everything together.
  • Nigella seeds: Add a unique, savoury depth with their slightly oniony, earthy flavour (fennel or cumin seeds also work beautifully here).
  • Psyllium husk: The “glue” of this recipe holds everything together and gives the crackers their snap. Don’t skip it!
  • Everything But the Bagel seasoning: Adds the perfect balance of salt, garlic, onion, and crunch to make every bite irresistible.
  • Sea salt: Enhances the natural flavours of the seeds and rounds everything out.
  • Boiling water: Activates the chia and psyllium, transforming the mixture into a pliable dough ready for baking.

How to Make These Homemade Seed Crackers

Making seed crackers from scratch is easier than you might think. With just a bowl, a baking sheet, and a little patience, you’ll have beautifully crisp crackers that taste far better than anything store-bought.

Mix the Dry Ingredients

In a large mixing bowl, combine all the seeds, ground flax, nigella, psyllium husk, seasoning, and salt. Stir well to distribute everything evenly.

Add the Water and Rest

Pour freshly boiled water over the mixture and stir until all the seeds are well coated. Cover the bowl with a kitchen towel and let it rest for 10–15 minutes. This allows the chia and psyllium to gel, creating a thick, spreadable consistency.

Shape the Crackers

Line a baking sheet with parchment paper and spread the mixture evenly across the surface using a spatula. Take care to make it uniform. Pro tip: too thick and the crackers will be chewy, and too thin and they’ll burn at the edges. Aim for about ¼ inch thick!

Bake Until Golden

Bake at 320°F (160°C) for 35–45 minutes, or until the crackers turn golden brown and feel dry to the touch. Keep an eye on them toward the end, as the edges may crisp first.

Cool and Break Apart

Transfer the baked cracker sheet to a wire rack to cool completely. Once cooled, you can cut it into neat squares or break it apart for a more rustic, natural look.

What to Serve With These Seed Crackers

These homemade protein crackers are endlessly versatile and pair well with both sweet and savoury spreads. These crackers scream snack time, and they make the perfect addition to a charcuterie board. Pack them for your next picnic with hummus, your favourite cheese or nut butter, and you’ve got a dream dipper!

How to Customize Your Seed Crackers

One of the best things about this recipe is that it’s pretty much foolproof, and you can add whatever seeds (or nuts) you desire. Change the seasoning if you want, go for sea salt and rosemary, Italian herbs and spices or keep them really simple with cracked pepper. I promise that you will make this recipe over and over again, and you can experiment each time until you find the ultimate balance for you!

How Long Will Homemade Seed Crackers Keep For?

When stored properly, these multi-seed crackers stay crisp and fresh for up to two weeks. Keep them in an airtight container at room temperature, away from humidity. For longer storage, you can also freeze them. Once cooled, place the crackers in a sealed container or freezer bag and store for up to three months. Re-crisp in the oven before serving.

Why This is The Best Seed Cracker Recipe!

These Everything But the Bagel Seed Crackers are the ultimate healthy snack, crunchy, flavorful, and deeply satisfying! They’re high in protein, rich in fibre, and made entirely from a handful of simple ingredients. The combination of seeds provides a complete source of plant-based protein while supporting hormone health and digestion.

They’re the kind of ridiculously expensive cracker that you’d buy in a grocery store because they’re healthy and go perfectly with everything. Easy to make, endlessly customizable and seriously just fun to make; this recipe is for all the peeps! Gluten free, dairy free, quick and easy, and packed with essential nutrients! 

Homemade Seed Cracker FAQ

Are seed crackers healthy? Yes! These homemade seed crackers are packed with fibre, protein, and healthy fats that keep you satisfied for longer. They’re a wonderful alternative to store-bought crackers, which often contain refined oils and flours.

Can I make these seed crackers gluten-free? It’s already gluten free!

Why use psyllium husk in crackers? Psyllium husk acts as a natural binder, helping the seeds hold together without flour or eggs. It gives the crackers structure, crispness, and that perfect snap when you break them.

Can I make them without Everything But the Bagel seasoning? Absolutely. You can substitute with your favourite spice blend, herbs, or even a simple sprinkle of salt and pepper. 

Can I double the recipe? Yes! Simply double all the ingredients and bake on two parchment-lined trays.

Did you make this recipe?

If you bake these Everything But the Bagel Seed Crackers, I’d love to hear your experience! Leave a comment and rating below, and then try these other delicious snacks:

Black Sesame Bark

3 Ingredient Chickpea Chocolate Bark

Strawberry Chocolate Bark

TERI ANN CARTY

Food Photographer and Recipe Developer based in Toronto, Canada. 

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Everything But the Bagel Seed Crackers

These Everything But the Bagel Seed Crackers are crispy, savoury, and satisfyingly nourishing. Made entirely from seeds and naturally gluten-free, they’re the perfect high-protein snack to pair with dips, cheese, or your favourite toppings. Easy to make, endlessly customizable, and beautifully wholesome. 
5 from 2 votes
Print Pin Rate
Servings: 28 crackers
Author: Teri-Ann Carty
Prep Time: 15 minutes
Cook Time: 30 minutes
Rest Time: 1 hour
Total Time: 1 hour 45 minutes

Equipment

Ingredients

  • ½ cup pumpkin seeds
  • ½ cup sunflower seeds
  • ¼ cup white sesame seeds
  • ¼ cup black sesame seeds
  • ¼ cup chia seeds
  • ¼ cup buckwheat groats
  • ¼ cup ground flaxseed
  • 2 tbsp nigella seeds*
  • 1 tbsp psyllium husk*
  • 1 tsp everything but the bagel seasoning*
  • ¼ tsp salt
  • 1 cup boiling water

Instructions

  • Preheat oven to 320 convection.
  • Add all the dry ingredients to a bowl and mix to combine.
  • Pour recently boiled water over the mixture and stir thoroughly.
  • Cover the bowl with a kitchen towel and let it sit for 10 -15 minutes until mixture has gelled.
  • Transfer to a parchment lined baking sheet. Spread mixture into an even layer. Be careful not to make it too thick in the middle or too thin on the sides.
  • Bake for 35-45 minutes until the crackers start to turn golden brown and dry to the touch.
  • Place on a wire rack to cool completely before cutting into desired shapes. You could break it apart also for a more rustic look!

Notes

  • Nigella seeds have a lovely earthy flavour, but if you can't find them, fennel seeds or cumin seeds would be lovely here too.
  • Don't skip the psyllium husk! It works as the glue to keep these crackers together.
  • Don't love EBTB? Use whatever seasoning you prefer.

Nutrition

Serving: 1cracker | Calories: 59kcal | Carbohydrates: 4g | Protein: 2g | Fat: 4g | Saturated Fat: 1g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 1g | Trans Fat: 0.003g | Sodium: 23mg | Potassium: 72mg | Fiber: 2g | Sugar: 0.1g | Vitamin A: 11IU | Vitamin C: 0.1mg | Calcium: 50mg | Iron: 1mg

*Macros are provided as an estimate for convenience. Your final numbers will vary depending on ingredient brands, substitutions, and how you portion the recipe.

6 Responses

  1. 5 stars
    Made it a couple of times… addicting! I have to find a way to flatten the mixture thinner to be crispier faster… had to leave them in the oven a lot longer each time… no big deal though! Goes well with beet hummus and lentil pate.

  2. 5 stars
    These are super tasty! I didn’t have black sesame seeds at hand so I left them out. Been on a buckwheat kick lately, using them to replace part of the oats in granola – but had not thought of adding them to crackers with them. Thanks for the idea!

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